PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca12014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 537aa    MW: 62945.3 Da    PI: 6.974
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca12014.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.71.7e-1751144190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 +fY+ YA  +GF++r+ ++kk  ++g+ +++  vC++eg+ +++ k+      ++k++r+++ t +gCka++++ +  +g+ ++++++ eHnHel+
  Dca12014.1  51 SFYRIYALACGFDIRRYSEKKW-DDGTLKTKLIVCNREGSYRQNIKDveeeniADKRSRRTTITPIGCKARIRLFLF-KGVLKIDTFVAEHNHELV 144
                 59***************98887.8888****************99999999998888999999***********999.9***************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-1351144IPR004330FAR1 DNA binding domain
PfamPF105513.5E-29266358IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MQEIEELSGI EGTNDVPNVP VIDEGVFCET VEKDFTPFVG QEFISVNEAH SFYRIYALAC  60
GFDIRRYSEK KWDDGTLKTK LIVCNREGSY RQNIKDVEEE NIADKRSRRT TITPIGCKAR  120
IRLFLFKGVL KIDTFVAEHN HELVTVENRE FQKLSSNLSD YHKFFIVSNM RLNIGASKTY  180
RMMKEYVNGY DNIGASLNHF KNFQRDIKCF IHDRDGQLFV DRFKVMGENK ADFYFDYDLD  240
GDNSLRRAIW VDSIAKRNYE LFGEAVAFDP TYSTNKYSMV FTPFTGVDNH KKSVTFCGAL  300
IAKEDFQSFN WVFSRFLIAM GGKEPEYIIT DQDPGIIKSV KHVFKRSRHR FCIWHIMNKV  360
ADKYGAARSD YKDFLAKLNS IVWNEEIDAV EFDHRWLEIM DCHGVGKDDW FADCFSIRNQ  420
WVLAHCKDLR MGSLMRTTQR SESSNSFFKR FEHKSGTLVE FWMRFESAMD QQRHNKKKLD  480
NYNKHSSPKL ITSLKIEDDG LKLYTHEIFK EFQEEVDLSL SKCSIKGYRE ENGFNEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-67FAR1-related sequence 5